About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_64093463_64094575_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
64093463 - 64094575
Intron Length:
1113

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
GTTTTGTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
GCAGTCTCAATT
Flanking Amino Acid:
PLQVRPDGGRWNFTFNRFEV
Intron Amino Acid Position:
139

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
69.3
35.8
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
87.1
0.84
0.8
84.6
36
Minor 5ss
28.1
-2.5
3
27.7
36.2
Minor BPS
49.2
0.02
1.6
61.06
43.1

Associated Gene:

Gene:
IL17RA
Ensembl Gene ID:
ENSAPLG00000012503
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013043
64089233 - 64102800
13568
ENSAPLT00000013040
64089345 - 64102800
13456
ENSAPLT00000013034
64085379 - 64102800
17422