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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_64098581_64098665_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
64098581 - 64098665
Intron Length:
85

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTACT
5'SS Class:
strong_major
3'SS Sequence:
CATCTTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTAATGAAAC
Flanking Amino Acid:
STFIPCSPAPSTDPPDDMII
Intron Amino Acid Position:
301

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
83.3
27.9
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
85.4
0.8
0.8
80.2
31.4
Minor 5ss
34.6
-1.7
2.8
44.2
37
Minor BPS
50.5
-0
2
71.6
38.4

Associated Gene:

Gene:
IL17RA
Ensembl Gene ID:
ENSAPLG00000012503
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013043
64089233 - 64102800
13568
ENSAPLT00000013040
64089345 - 64102800
13456
ENSAPLT00000013034
64085379 - 64102800
17422