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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_64098681_64099546_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
64098681 - 64099546
Intron Length:
866

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTACCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
CTTTTTGTACCA
Flanking Amino Acid:
CSPAPSTDPPDDMIIWLYWC
Intron Amino Acid Position:
306

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
79
35.3
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
79.3
0.66
0.9
73.7
35.7
Minor 5ss
33.8
-1.8
2.9
43.7
43.6
Minor BPS
47.8
-0.1
2.2
65.59
41.9

Associated Gene:

Gene:
IL17RA
Ensembl Gene ID:
ENSAPLG00000012503
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013043
64089233 - 64102800
13568
ENSAPLT00000013040
64089345 - 64102800
13456
ENSAPLT00000013034
64085379 - 64102800
17422