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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_64099649_64100722_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
64099649 - 64100722
Intron Length:
1074

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGACTC
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
GTTTTCAGAACT
Flanking Amino Acid:
AVICMTKKRAALQQRKCSHN
Intron Amino Acid Position:
340

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
79
35.3
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
84.6
0.78
0.7
76.4
32.2
Minor 5ss
36.5
-1.5
3.2
50.8
45.8
Minor BPS
61.8
0.45
1.7
82.74
37.7

Associated Gene:

Gene:
IL17RA
Ensembl Gene ID:
ENSAPLG00000012503
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013043
64089233 - 64102800
13568
ENSAPLT00000013040
64089345 - 64102800
13456
ENSAPLT00000013034
64085379 - 64102800
17422