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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_6410903_6414710_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6410903 - 6414710
Intron Length:
3808

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGACT
5'SS Class:
strong_major
3'SS Sequence:
TTCACCCTTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
TTTTCTTCACCC
Flanking Amino Acid:
FLNAKSCIYKELIEVDSEVV
Intron Amino Acid Position:
145

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.8
0.98
0.8
85.2
31.7
Major BPS
77.5
0.68
1
79.6
33
Major PPT
67.5
0.39
1
64.3
36.8
Minor 5ss
34.9
-1.7
3.2
49.5
46.5
Minor BPS
63.3
0.4
1.8
78.34
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023557
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032618
6369123 - 6526339
157217