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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_64109745_64109865_R

Intron Information:

Intron Rank:
152090
Intron Class:
major
Intron Phase:
Intron Coordinates:
64109745 - 64109865
Intron Length:
121

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGAACA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTATGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTTCTTTTATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
0.9
72.2
32.1
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
87.7
0.85
0.8
84.7
29
Minor 5ss
28.5
-2.5
2.7
29.8
36.4
Minor BPS
68.5
0.44
1.6
74.98
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029416
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024507
64107469 - 64111189
3721