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Intron Name: Anas_platyrhynchos_platyrhynchos_1_64124785_64125169_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

64124785 - 64125169

Intron Length:

385

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGCAGT

5'SS Class:

strong_major

3'SS Sequence:

TGACATCTTCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGACAT

U12 Branch Point Sequence:

CATCTCTTGACA

Flanking Amino Acid:

PPTTGFPTIEGVILFGEPVR

Intron Amino Acid Position:

178

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.5

0.95

0.9

81.8

38.5

Major BPS

67.6

0.44

1.2

Major PPT

72.4

0.5

62.2

43.8

Minor 5ss

41.1

-1

2.9

57.9

46.4

Minor BPS

65.3

0.48

1.3

68.31

37.8

Associated Gene:

Gene:

HDHD5

Ensembl Gene ID:

ENSAPLG00000012533

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013052

64123177 - 64127790

4614