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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_64127594_64127703_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
64127594 - 64127703
Intron Length:
110

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGGAGC
5'SS Class:
major
3'SS Sequence:
GCTCGCCTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGCTGAC
U12 Branch Point Sequence:
GGGCGCTGACCG
Flanking Amino Acid:
PGRGCSAGGRPPPAFGFLFD
Intron Amino Acid Position:
30

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
63.9
42.4
Major BPS
53.9
0.1
1.2
46.4
38.9
Major PPT
73.4
0.53
0.9
65.3
36.2
Minor 5ss
26.7
-2.7
2.9
25.7
36.9
Minor BPS
39.5
-0.9
2
39.33
43.5

Associated Gene:

Gene:
HDHD5
Ensembl Gene ID:
ENSAPLG00000012533
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013052
64123177 - 64127790
4614