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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_64137628_64138493_R

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
64137628 - 64138493
Intron Length:
866

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTGA
5'SS Class:
strong_major
3'SS Sequence:
CTTCCCTACCGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ACATGAT
U12 Branch Point Sequence:
CCTTCCCTACCG
Flanking Amino Acid:
PVEVCPISNQVLLLVSDLRS
Intron Amino Acid Position:
299

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.9
76.7
34.9
Major BPS
63.3
0.33
1.1
53.7
41.6
Major PPT
51.1
0.03
1.7
57.9
37.5
Minor 5ss
45.7
-0.5
2.5
58.5
46
Minor BPS
49.7
-0.1
2.1
59.58
47.9

Associated Gene:

Gene:
ADA2
Ensembl Gene ID:
ENSAPLG00000012586
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013137
64136426 - 64149081
12656