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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_64141160_64142680_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
64141160 - 64142680
Intron Length:
1521

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTATGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTYGTCCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTAAC
U12 Branch Point Sequence:
TTYGTCCTACAG
Flanking Amino Acid:
YAEIRAILPPVYELDGTRHN
Intron Amino Acid Position:
137

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
83.9
34.2
Major BPS
69.4
0.48
1.1
69.6
35.5
Major PPT
86.8
0.83
0.7
80.9
31.3
Minor 5ss
48.2
-0.2
2.5
69.3
41.2
Minor BPS
41.8
-0.7
2
48.24
45.3

Associated Gene:

Gene:
ADA2
Ensembl Gene ID:
ENSAPLG00000012586
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013137
64136426 - 64149081
12656