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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_6414796_6426051_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6414796 - 6426051
Intron Length:
11256

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGCG
5'SS Class:
strong_major
3'SS Sequence:
TTCCCCCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTCAC
U12 Branch Point Sequence:
TGTGTCTCACCT
Flanking Amino Acid:
SGPVVLYFCVRFYIESISYL
Intron Amino Acid Position:
116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.1
1.04
0.8
78.8
35.5
Major BPS
67.3
0.43
1.2
71.3
36.7
Major PPT
81.9
0.72
0.7
73.1
31.7
Minor 5ss
33
-1.9
3.1
41.3
45.2
Minor BPS
49.8
0.06
1.9
72.31
44.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023557
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032618
6369123 - 6526339
157217