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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_64223042_64223707_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
64223042 - 64223707
Intron Length:
666

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGGAAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTTGGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTGTGTCACT
Flanking Amino Acid:
RKKLLEENLLREKAEENMLI
Intron Amino Acid Position:
177

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
76.6
33.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
81
0.7
0.9
80.5
31.5
Minor 5ss
37.7
-1.4
3.1
47.6
48.1
Minor BPS
44.6
-0.3
2.6
72.26
45

Associated Gene:

Gene:
CECR2
Ensembl Gene ID:
ENSAPLG00000012627
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027953
64222406 - 64241613
19208
ENSAPLT00000013186
64200611 - 64241613
41003
ENSAPLT00000044383
64198256 - 64241613
43358