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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_64223758_64226136_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
64223758 - 64226136
Intron Length:
2379

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAAGAGA
5'SS Class:
major
3'SS Sequence:
CATGTTGTTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
CATCCTTTCATG
Flanking Amino Acid:
MLIRETQIRNGSQGPGRGTW
Intron Amino Acid Position:
194

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.54
1
64.7
40.9
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
64
0.32
1.2
63.5
41.7
Minor 5ss
31.1
-2.2
3.2
36.7
42.5
Minor BPS
48.7
-0.2
1.8
53.34
42.2

Associated Gene:

Gene:
CECR2
Ensembl Gene ID:
ENSAPLG00000012627
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044383
64198256 - 64241613
43358
ENSAPLT00000027953
64222406 - 64241613
19208
ENSAPLT00000013186
64200611 - 64241613
41003