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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_64226307_64227043_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
64226307 - 64227043
Intron Length:
737

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
AACCCTGTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
CTTCCCTCAATT
Flanking Amino Acid:
PEICNMIAQKEKRLQRPEFS
Intron Amino Acid Position:
251

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
74.8
37
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
69.9
0.45
1
65.4
40.1
Minor 5ss
26.2
-2.7
2.9
30.9
42.7
Minor BPS
67.9
0.64
1.6
81.83
39.8

Associated Gene:

Gene:
CECR2
Ensembl Gene ID:
ENSAPLG00000012627
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044383
64198256 - 64241613
43358
ENSAPLT00000013186
64200611 - 64241613
41003