Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_64233577_64236175_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

64233577 - 64236175

Intron Length:

2599

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTTGTTTAA

5'SS Class:

major

3'SS Sequence:

TGTTGTTGACAAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TCTGCAA

U12 Branch Point Sequence:

ATGTTGTTGACA

Flanking Amino Acid:

EGTCSQSVWKGALNGFFCLS

Intron Amino Acid Position:

462

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

64.5

0.34

1.3

65.1

Major BPS

53.2

0.08

1.4

65.6

41.4

Major PPT

57.5

0.17

1.2

57.3

46.7

Minor 5ss

34.5

-1.8

2.9

41.2

45.1

Minor BPS

53.7

0.11

2.1

67.62

39.1

Associated Gene:

Gene:

CECR2

Ensembl Gene ID:

ENSAPLG00000012627

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044383

64198256 - 64241613

43358