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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_64236351_64236637_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
64236351 - 64236637
Intron Length:
287

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTGAGTATG
5'SS Class:
major
3'SS Sequence:
CTTCCAATTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
GTTCTTCCAATT
Flanking Amino Acid:
PTREERRTKDLFELDDEFTA
Intron Amino Acid Position:
372

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.1
71.2
40.3
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
77.1
0.61
0.9
69.7
34.3
Minor 5ss
36.8
-1.5
2.9
52.3
44.3
Minor BPS
46.8
-0.1
1.8
66.81
38

Associated Gene:

Gene:
CECR2
Ensembl Gene ID:
ENSAPLG00000012627
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027953
64222406 - 64241613
19208
ENSAPLT00000013186
64200611 - 64241613
41003
ENSAPLT00000044383
64198256 - 64241613
43358