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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_64236676_64236774_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
64236676 - 64236774
Intron Length:
99

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTCCA
5'SS Class:
strong_major
3'SS Sequence:
TTGTTGCTACCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTGTAAT
U12 Branch Point Sequence:
ATGTGTGTAATC
Flanking Amino Acid:
LDDEFTAMYKVLDVVKAHKD
Intron Amino Acid Position:
385

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1.1
72.7
38.3
Major BPS
66.7
0.41
1.4
69.7
44.2
Major PPT
74
0.54
1
67
43.8
Minor 5ss
30.9
-2.2
2.6
34.6
40.9
Minor BPS
46.1
-0.3
2.3
59.63
40.7

Associated Gene:

Gene:
CECR2
Ensembl Gene ID:
ENSAPLG00000012627
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044383
64198256 - 64241613
43358
ENSAPLT00000027953
64222406 - 64241613
19208
ENSAPLT00000013186
64200611 - 64241613
41003