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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_64236867_64237135_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
64236867 - 64237135
Intron Length:
269

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGAAA
5'SS Class:
strong_major
3'SS Sequence:
TGCTGAATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTCAA
U12 Branch Point Sequence:
TTTTGCTGAATT
Flanking Amino Acid:
YAPNYYQIIKAPMDISSMEK
Intron Amino Acid Position:
416

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
74.9
37
Major BPS
69.1
0.48
0.9
69.6
26.6
Major PPT
71.6
0.49
1
66.8
43
Minor 5ss
30.2
-2.3
3.3
38.5
46.8
Minor BPS
68.3
0.65
1.9
88.83
36.2

Associated Gene:

Gene:
CECR2
Ensembl Gene ID:
ENSAPLG00000012627
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027953
64222406 - 64241613
19208
ENSAPLT00000013186
64200611 - 64241613
41003
ENSAPLT00000044383
64198256 - 64241613
43358