Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_64237263_64238670_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

64237263 - 64238670

Intron Length:

1408

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTAAGAGCA

5'SS Class:

strong_major

3'SS Sequence:

TTTCTTTTGGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CCTTGAT

U12 Branch Point Sequence:

CTGTCCTTGATG

Flanking Amino Acid:

NCLKYNGEGSEYTKMAYNLE

Intron Amino Acid Position:

458

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.8

0.77

0.9

70.5

33.4

Major BPS

71.5

0.53

1.1

43.2

Major PPT

85.6

0.8

0.9

84.2

30.7

Minor 5ss

30.9

-2.2

3.3

36.6

41.5

Minor BPS

68.6

0.44

1.4

65.9

42.8

Associated Gene:

Gene:

CECR2

Ensembl Gene ID:

ENSAPLG00000012627

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044383

64198256 - 64241613

43358

ENSAPLT00000027953

64222406 - 64241613

19208

ENSAPLT00000013186

64200611 - 64241613

41003