Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_64240451_64240622_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

64240451 - 64240622

Intron Length:

172

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAATTGT

5'SS Class:

strong_major

3'SS Sequence:

TCTGCCTCCCCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCTCAC

U12 Branch Point Sequence:

CTCTCACTGACA

Flanking Amino Acid:

VQQHQHFAMQPAVGLSEHRG

Intron Amino Acid Position:

627

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.87

0.9

81.2

33.8

Major BPS

72.7

0.56

30.1

Major PPT

74.4

0.55

0.8

65.5

36.1

Minor 5ss

41.3

-1

58.7

45.8

Minor BPS

49.2

-0

64.41

41.8

Associated Gene:

Gene:

CECR2

Ensembl Gene ID:

ENSAPLG00000012627

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044383

64198256 - 64241613

43358

ENSAPLT00000027953

64222406 - 64241613

19208

ENSAPLT00000013186

64200611 - 64241613

41003