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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_64267025_64267601_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
64267025 - 64267601
Intron Length:
577

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTCAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTGAT
U12 Branch Point Sequence:
TCTTTCTCAACA
Flanking Amino Acid:
ESRLDLVAQQMMPEIRVALF
Intron Amino Acid Position:
207

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.9
1.06
0.6
93
14.8
Major BPS
74.7
0.61
0.9
63.4
35.6
Major PPT
81.1
0.7
0.8
77.6
29.8
Minor 5ss
40.7
-1
3
57.8
46.8
Minor BPS
71.9
0.68
1.5
79.1
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012718
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013260
64266962 - 64277273
10312