About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_64269122_64270363_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
64269122 - 64270363
Intron Length:
1242

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATATT
5'SS Class:
strong_major
3'SS Sequence:
ATCTTTTGTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTTTCTGATACT
Flanking Amino Acid:
QMLLDGLVLQGFYQLLEPKI
Intron Amino Acid Position:
123

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
93.3
21.1
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
80.7
0.69
0.9
76.7
36.8
Minor 5ss
41
-1
3
59.7
44.8
Minor BPS
47.7
-0.1
2.5
79.44
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012718
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013260
64266962 - 64277273
10312