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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_64270454_64272266_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
64270454 - 64272266
Intron Length:
1813

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTGAGTATC
5'SS Class:
major
3'SS Sequence:
CTTCTGAATGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TTCTTCTGAATG
Flanking Amino Acid:
VLKARDDLIADLLNEAKLRL
Intron Amino Acid Position:
93

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
75.4
34.4
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
68.3
0.41
1
63.1
37.3
Minor 5ss
37
-1.5
2.9
51.4
39.2
Minor BPS
64.6
0.32
1.5
67.49
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012718
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013260
64266962 - 64277273
10312