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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_64272334_64272820_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
64272334 - 64272820
Intron Length:
487

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
ATGCAACTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
ACTGATTCAACT
Flanking Amino Acid:
KEKQIEQQKKIQMSNLMNQA
Intron Amino Acid Position:
70

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
1
80.5
27.7
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
68
0.4
1
59.4
41
Minor 5ss
42.9
-0.8
2.8
57.1
40.8
Minor BPS
49.2
0.02
1.8
67.25
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012718
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013260
64266962 - 64277273
10312