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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_64272931_64274406_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
64272931 - 64274406
Intron Length:
1476

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAATG
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTACTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
AGTTATTTAATT
Flanking Amino Acid:
NEKAEEIDAKAEEEFNIEKG
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
0.9
77.9
36.7
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
80.1
0.68
0.8
75.6
33.5
Minor 5ss
36.4
-1.5
3.1
48.5
47.2
Minor BPS
68.4
0.66
1.4
80.15
35.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012718
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013260
64266962 - 64277273
10312