About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_64281359_64288886_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
64281359 - 64288886
Intron Length:
7528

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATATTT
5'SS Class:
strong_major
3'SS Sequence:
TGATTTCTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
ATTTCTTTGATT
Flanking Amino Acid:
PQEHPPASTQGTQQPMAQHA
Intron Amino Acid Position:
94

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
83.5
28.8
Major BPS
84
0.85
0.9
75
39.9
Major PPT
79.7
0.67
0.8
78
36.2
Minor 5ss
43.9
-0.7
3.1
65.3
45.8
Minor BPS
79
1
1
88.92
28.9

Associated Gene:

Gene:
BCL2L13
Ensembl Gene ID:
ENSAPLG00000008978
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009330
64278833 - 64312872
34040