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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_64288995_64289962_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
64288995 - 64289962
Intron Length:
968

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCTGTTC
5'SS Class:
major
3'SS Sequence:
CTTTTTCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
GTTTACTCATTT
Flanking Amino Acid:
LKRLDEEILEAFTTTGFDCH
Intron Amino Acid Position:
130

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.2
0.4
1.1
63
38.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
93.6
0.98
0.6
92.3
18
Minor 5ss
34.8
-1.7
3.5
49.9
46.7
Minor BPS
50.3
0.09
2
74.32
42.4

Associated Gene:

Gene:
BCL2L13
Ensembl Gene ID:
ENSAPLG00000008978
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009330
64278833 - 64312872
34040