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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_64318597_64320132_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
64318597 - 64320132
Intron Length:
1536

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TCCCTCCACGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
CTTCCCTCCACG
Flanking Amino Acid:
HFLNENLSREEITRCLSQAV
Intron Amino Acid Position:
123

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
82.8
23.2
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
70.4
0.46
0.8
65.3
29.3
Minor 5ss
26.6
-2.7
3
30.8
43.1
Minor BPS
49.4
-0.1
2.1
61.08
46.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008971
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009326
64318200 - 64322641
4442