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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_64339529_64339614_R

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
64339529 - 64339614
Intron Length:
86

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
GATGTGTCTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
AGTTTCTGATGT
Flanking Amino Acid:
QELRERMAVEDHLKTDEELS
Intron Amino Acid Position:
2028

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.8
73.9
29.7
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
66.1
0.36
1
58.8
42.7
Minor 5ss
25.3
-2.8
3.1
30.4
42.9
Minor BPS
47.6
-0.1
2
67.64
43

Associated Gene:

Gene:
MICAL3
Ensembl Gene ID:
ENSAPLG00000007993
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017265
64339344 - 64435003
95660
ENSAPLT00000024725
64339344 - 64435003
95660
ENSAPLT00000008358
64339344 - 64441559
102216
ENSAPLT00000024635
64339344 - 64441559
102216
ENSAPLT00000036272
64339344 - 64435003
95660
ENSAPLT00000023040
64339344 - 64441559
102216
ENSAPLT00000034421
64339344 - 64441559
102216
ENSAPLT00000020396
64339344 - 64441559
102216
ENSAPLT00000032344
64339344 - 64437147
97804