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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_64339689_64340690_R

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
64339689 - 64340690
Intron Length:
1002

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTGAGTGAA
5'SS Class:
major
3'SS Sequence:
GTTTCCCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGGAC
U12 Branch Point Sequence:
TTTGTTTGGACT
Flanking Amino Acid:
LVRYESELMIFARELELEDR
Intron Amino Acid Position:
2003

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1
68.4
31.2
Major BPS
61.5
0.29
1.4
63.1
44.5
Major PPT
83.1
0.74
0.8
73.9
36.8
Minor 5ss
29.1
-2.4
3.2
36.8
41.9
Minor BPS
58.2
0.34
1.6
78.78
37.9

Associated Gene:

Gene:
MICAL3
Ensembl Gene ID:
ENSAPLG00000007993
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017265
64339344 - 64435003
95660
ENSAPLT00000024725
64339344 - 64435003
95660
ENSAPLT00000008358
64339344 - 64441559
102216
ENSAPLT00000024635
64339344 - 64441559
102216
ENSAPLT00000036272
64339344 - 64435003
95660
ENSAPLT00000023040
64339344 - 64441559
102216
ENSAPLT00000034421
64339344 - 64441559
102216
ENSAPLT00000020396
64339344 - 64441559
102216
ENSAPLT00000032344
64339344 - 64437147
97804