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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_64340791_64358232_R

Intron Information:

Intron Rank:
35
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
64340791 - 64358232
Intron Length:
17442

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCCAGC
5'SS Class:
weak_major
3'SS Sequence:
TCTTTCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TTACCTGGAAAT
Flanking Amino Acid:
AVEKALRGEAGMGKKDDPKL
Intron Amino Acid Position:
2077

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.4
0.41
1.2
59.7
45.2
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
92.4
0.95
0.6
88.1
21.7
Minor 5ss
54.8
0.16
2.2
69.8
40.7
Minor BPS
46
-0.2
2.1
68.72
41.6

Associated Gene:

Gene:
MICAL3
Ensembl Gene ID:
ENSAPLG00000007993
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032344
64339344 - 64437147
97804
ENSAPLT00000023040
64339344 - 64441559
102216
ENSAPLT00000036272
64339344 - 64435003
95660