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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_64343202_64358232_R

Intron Information:

Intron Rank:
30
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
64343202 - 64358232
Intron Length:
15031

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCCAGC
5'SS Class:
weak_major
3'SS Sequence:
GGTCCTATTGAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCCTAT
U12 Branch Point Sequence:
TTGGTCCTATTG
Flanking Amino Acid:
AVEKALRGEAVEPNAGTPRR
Intron Amino Acid Position:
1948

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.4
0.41
1.2
59.7
45.2
Major BPS
51
0.03
1.4
52.4
44.8
Major PPT
62
0.27
1.1
60.8
39.2
Minor 5ss
54.8
0.16
2.2
69.8
40.7
Minor BPS
44.1
-0.5
2
50.86
44.2

Associated Gene:

Gene:
MICAL3
Ensembl Gene ID:
ENSAPLG00000007993
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008358
64339344 - 64441559
102216
ENSAPLT00000024725
64339344 - 64435003
95660
ENSAPLT00000024635
64339344 - 64441559
102216
ENSAPLT00000020396
64339344 - 64441559
102216
ENSAPLT00000017265
64339344 - 64435003
95660
ENSAPLT00000034421
64339344 - 64441559
102216