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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_64358327_64359059_R

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
64358327 - 64359059
Intron Length:
733

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGTGTCT
5'SS Class:
major
3'SS Sequence:
CTTTCCTGAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GAATCAC
U12 Branch Point Sequence:
CTTTCCTGAACA
Flanking Amino Acid:
EELKRLHRAQIIQRQLEQVE
Intron Amino Acid Position:
1917

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.8
0.49
1.1
65.9
40.4
Major BPS
52.8
0.07
1.2
57.7
39
Major PPT
72.9
0.52
1
69.4
35.6
Minor 5ss
38
-1.3
3.6
56.7
47.6
Minor BPS
78.6
0.89
1.4
84.45
35.5

Associated Gene:

Gene:
MICAL3
Ensembl Gene ID:
ENSAPLG00000007993
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017265
64339344 - 64435003
95660
ENSAPLT00000024725
64339344 - 64435003
95660
ENSAPLT00000008358
64339344 - 64441559
102216
ENSAPLT00000024635
64339344 - 64441559
102216
ENSAPLT00000036272
64339344 - 64435003
95660
ENSAPLT00000023040
64339344 - 64441559
102216
ENSAPLT00000034421
64339344 - 64441559
102216
ENSAPLT00000020396
64339344 - 64441559
102216
ENSAPLT00000032344
64339344 - 64437147
97804