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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_64359168_64364766_R

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
64359168 - 64364766
Intron Length:
5599

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGCAGG
5'SS Class:
major
3'SS Sequence:
TTTCTTCCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAA
U12 Branch Point Sequence:
TGGAAATAAAAT
Flanking Amino Acid:
ERSSQKSKRERAYTEEELNA
Intron Amino Acid Position:
1881

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1.1
63.6
48.1
Major BPS
62
0.3
1
62.3
30.4
Major PPT
86.6
0.82
0.6
85.9
21.2
Minor 5ss
37.4
-1.4
3.1
48.3
47.5
Minor BPS
41.2
-0.5
2
57.4
44.2

Associated Gene:

Gene:
MICAL3
Ensembl Gene ID:
ENSAPLG00000007993
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020396
64339344 - 64441559
102216
ENSAPLT00000034421
64339344 - 64441559
102216
ENSAPLT00000017265
64339344 - 64435003
95660
ENSAPLT00000032344
64339344 - 64437147
97804
ENSAPLT00000008358
64339344 - 64441559
102216
ENSAPLT00000024725
64339344 - 64435003
95660
ENSAPLT00000024635
64339344 - 64441559
102216
ENSAPLT00000036272
64339344 - 64435003
95660