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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_64370586_64373702_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
64370586 - 64373702
Intron Length:
3117

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGTTTGG
5'SS Class:
major
3'SS Sequence:
GAATATATTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
TTTCTCTCAATA
Flanking Amino Acid:
VQAWLETVPGAPCEDNDVED
Intron Amino Acid Position:
1115

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1.1
62.5
44.6
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
62.5
0.28
1
52.3
46.2
Minor 5ss
38.3
-1.3
3.1
49.7
46.5
Minor BPS
66.5
0.52
1.5
76.84
33.9

Associated Gene:

Gene:
MICAL3
Ensembl Gene ID:
ENSAPLG00000007993
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020396
64339344 - 64441559
102216
ENSAPLT00000034421
64339344 - 64441559
102216
ENSAPLT00000017265
64339344 - 64435003
95660
ENSAPLT00000024725
64339344 - 64435003
95660
ENSAPLT00000008358
64339344 - 64441559
102216
ENSAPLT00000024635
64339344 - 64441559
102216
ENSAPLT00000023040
64339344 - 64441559
102216
ENSAPLT00000036272
64339344 - 64435003
95660