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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_64370586_64380325_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
64370586 - 64380325
Intron Length:
9740

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGACAG
5'SS Class:
major
3'SS Sequence:
GAATATATTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
TTTCTCTCAATA
Flanking Amino Acid:
EEEEEEESSEAPCEDNDVED
Intron Amino Acid Position:
1120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1.2
63.7
42.3
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
62.5
0.28
1
52.3
46.2
Minor 5ss
27.7
-2.6
2.8
30.5
42.7
Minor BPS
66.5
0.52
1.5
76.84
33.9

Associated Gene:

Gene:
MICAL3
Ensembl Gene ID:
ENSAPLG00000007993
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032344
64339344 - 64437147
97804