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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_64373766_64375821_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
64373766 - 64375821
Intron Length:
2056

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATCTTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTAAATTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TGTTTTTTAAAT
Flanking Amino Acid:
VPTSKSSTSRASDLPSVRHE
Intron Amino Acid Position:
1094

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
75.1
36
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
81.5
0.71
0.9
79.7
36.9
Minor 5ss
48.5
-0.1
2.8
68
43.2
Minor BPS
73.6
0.82
1.3
85.52
34.2

Associated Gene:

Gene:
MICAL3
Ensembl Gene ID:
ENSAPLG00000007993
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024725
64339344 - 64435003
95660
ENSAPLT00000020396
64339344 - 64441559
102216
ENSAPLT00000017265
64339344 - 64435003
95660
ENSAPLT00000036272
64339344 - 64435003
95660
ENSAPLT00000008358
64339344 - 64441559
102216
ENSAPLT00000034421
64339344 - 64441559
102216