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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_64379228_64380325_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
64379228 - 64380325
Intron Length:
1098

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGACAG
5'SS Class:
major
3'SS Sequence:
CCCTCTGCTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTTAT
U12 Branch Point Sequence:
ATGTTATGGATG
Flanking Amino Acid:
EEEEEEESSEEGEYCPWERE
Intron Amino Acid Position:
1018

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1.2
63.7
42.3
Major BPS
72.5
0.56
1.2
63.4
44
Major PPT
70.2
0.46
0.8
64.8
30.8
Minor 5ss
27.7
-2.6
2.8
30.5
42.7
Minor BPS
44.9
-0.5
1.7
49.69
38.4

Associated Gene:

Gene:
MICAL3
Ensembl Gene ID:
ENSAPLG00000007993
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020396
64339344 - 64441559
102216
ENSAPLT00000017265
64339344 - 64435003
95660
ENSAPLT00000036272
64339344 - 64435003
95660
ENSAPLT00000008358
64339344 - 64441559
102216
ENSAPLT00000034421
64339344 - 64441559
102216
ENSAPLT00000024725
64339344 - 64435003
95660