About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_64380589_64385316_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
64380589 - 64385316
Intron Length:
4728

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TAAACCCTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTTTAAACC
Flanking Amino Acid:
DKGTEEDVPSSSSESEMEEE
Intron Amino Acid Position:
930

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
1.1
81.8
31.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
70.7
0.47
1
62.8
38.9
Minor 5ss
32.4
-2
2.4
35.7
40.3
Minor BPS
70.5
0.62
1.6
81.25
33.5

Associated Gene:

Gene:
MICAL3
Ensembl Gene ID:
ENSAPLG00000007993
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023040
64339344 - 64441559
102216
ENSAPLT00000034421
64339344 - 64441559
102216
ENSAPLT00000020396
64339344 - 64441559
102216
ENSAPLT00000032344
64339344 - 64437147
97804
ENSAPLT00000017265
64339344 - 64435003
95660
ENSAPLT00000024725
64339344 - 64435003
95660
ENSAPLT00000008358
64339344 - 64441559
102216
ENSAPLT00000024635
64339344 - 64441559
102216
ENSAPLT00000036272
64339344 - 64435003
95660