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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_64406146_64408521_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
64406146 - 64408521
Intron Length:
2376

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
ATTCTGTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCGACCATCATT
Flanking Amino Acid:
LSSYAYDIEDGKFYCKPHYC
Intron Amino Acid Position:
809

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
73.1
31.1
Major BPS
100
1.24
0.5
100
0
Major PPT
80
0.68
0.9
73.7
36.2
Minor 5ss
29.9
-2.3
3.3
35
42.5
Minor BPS
47
-0.1
2
65.19
45.6

Associated Gene:

Gene:
MICAL3
Ensembl Gene ID:
ENSAPLG00000007993
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020396
64339344 - 64441559
102216
ENSAPLT00000032344
64339344 - 64437147
97804
ENSAPLT00000017265
64339344 - 64435003
95660
ENSAPLT00000024725
64339344 - 64435003
95660
ENSAPLT00000008358
64339344 - 64441559
102216
ENSAPLT00000024635
64339344 - 64441559
102216
ENSAPLT00000036272
64339344 - 64435003
95660
ENSAPLT00000023040
64339344 - 64441559
102216
ENSAPLT00000034421
64339344 - 64441559
102216