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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_64416502_64418997_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
64416502 - 64418997
Intron Length:
2496

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGATTCCC
5'SS Class:
major
3'SS Sequence:
TTGTTGCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCATAAT
U12 Branch Point Sequence:
AAGCTCATAATT
Flanking Amino Acid:
PSSPTYPRQQRNREPGADYL
Intron Amino Acid Position:
809

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
67.7
37.5
Major BPS
75.2
0.63
1.1
74.5
36.6
Major PPT
80
0.67
0.9
74
36.8
Minor 5ss
30.1
-2.3
2.7
36.9
40.1
Minor BPS
51.5
0.13
1.6
65.82
38.6

Associated Gene:

Gene:
MICAL3
Ensembl Gene ID:
ENSAPLG00000007993
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024635
64339344 - 64441559
102216
ENSAPLT00000023040
64339344 - 64441559
102216
ENSAPLT00000034421
64339344 - 64441559
102216