Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_64425373_64426098_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

64425373 - 64426098

Intron Length:

726

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAT|GTAAGTATT

5'SS Class:

strong_major

3'SS Sequence:

CACTGGTTGATAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTTTGAT

U12 Branch Point Sequence:

TATCTGTTAAAT

Flanking Amino Acid:

KRRKTSQSEDEDVPRSYREE

Intron Amino Acid Position:

689

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.9

92.9

22.2

Major BPS

96.4

1.15

0.6

85.7

34.9

Major PPT

0.18

1.1

52.7

41.4

Minor 5ss

44.1

-0.6

2.9

65.1

39.1

Minor BPS

0.17

2.1

75.75

40.4

Associated Gene:

Gene:

MICAL3

Ensembl Gene ID:

ENSAPLG00000007993

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008358

64339344 - 64441559

102216

ENSAPLT00000024635

64339344 - 64441559

102216

ENSAPLT00000036272

64339344 - 64435003

95660

ENSAPLT00000023040

64339344 - 64441559

102216

ENSAPLT00000034421

64339344 - 64441559

102216

ENSAPLT00000020396

64339344 - 64441559

102216

ENSAPLT00000032344

64339344 - 64437147

97804

ENSAPLT00000017265

64339344 - 64435003

95660

ENSAPLT00000024725

64339344 - 64435003

95660