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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_64432036_64432696_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
64432036 - 64432696
Intron Length:
661

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTTTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATAGAT
U12 Branch Point Sequence:
GGCTGTTTCACT
Flanking Amino Acid:
SLLDKGVIRHDYADTELLLS
Intron Amino Acid Position:
317

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
89
24.3
Major BPS
71.4
0.53
1
67
39.8
Major PPT
78.2
0.64
0.9
75.8
32.7
Minor 5ss
38.7
-1.3
3
56
41.5
Minor BPS
47.4
-0.1
2.2
64.71
45.9

Associated Gene:

Gene:
MICAL3
Ensembl Gene ID:
ENSAPLG00000007993
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017265
64339344 - 64435003
95660
ENSAPLT00000024725
64339344 - 64435003
95660
ENSAPLT00000008358
64339344 - 64441559
102216
ENSAPLT00000024635
64339344 - 64441559
102216
ENSAPLT00000036272
64339344 - 64435003
95660
ENSAPLT00000023040
64339344 - 64441559
102216
ENSAPLT00000034421
64339344 - 64441559
102216
ENSAPLT00000020396
64339344 - 64441559
102216
ENSAPLT00000032344
64339344 - 64437147
97804