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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_64512234_64512653_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
64512234 - 64512653
Intron Length:
420

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTGTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTATTAT
U12 Branch Point Sequence:
TTTTCTATTATT
Flanking Amino Acid:
GHLPPKILELCILLYSKVGE
Intron Amino Acid Position:
182

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
74
36.6
Major BPS
72.4
0.56
1.1
63.7
42.3
Major PPT
82
0.72
0.9
76.3
37.7
Minor 5ss
31
-2.2
3.2
37
41.8
Minor BPS
60.6
0.42
1.9
84.75
35.7

Associated Gene:

Gene:
PEX26
Ensembl Gene ID:
ENSAPLG00000024303
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031290
64511498 - 64516041
4544