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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_64512968_64514275_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
64512968 - 64514275
Intron Length:
1308

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAGGCTTT
5'SS Class:
major
3'SS Sequence:
TCTCATTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTTACCCTAACA
Flanking Amino Acid:
EQDKATETVLGALSQKLLTM
Intron Amino Acid Position:
287

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1.1
69.7
43.7
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
80.5
0.69
0.8
73
37
Minor 5ss
47.9
-0.2
3.2
64.2
47.3
Minor BPS
73
0.72
1.7
85.44
33.3

Associated Gene:

Gene:
PEX26
Ensembl Gene ID:
ENSAPLG00000024303
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031290
64511498 - 64516041
4544