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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_64514423_64515178_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
64514423 - 64515178
Intron Length:
756

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGTAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTCGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
AAAGGTAAAACT
Flanking Amino Acid:
LYLVVVRLDPASPTSLPFLC
Intron Amino Acid Position:
336

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
77.4
33.4
Major BPS
78.6
0.71
1
78.6
31
Major PPT
88.2
0.86
0.7
84.2
30.7
Minor 5ss
44.5
-0.6
3.2
63.6
48.1
Minor BPS
38.8
-0.7
2.1
52.88
42.1

Associated Gene:

Gene:
PEX26
Ensembl Gene ID:
ENSAPLG00000024303
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031290
64511498 - 64516041
4544