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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_64531371_64534725_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
64531371 - 64534725
Intron Length:
3355

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGGGG
5'SS Class:
major
3'SS Sequence:
TCTCTCTCCCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCACAT
U12 Branch Point Sequence:
GTTTCCTGACCC
Flanking Amino Acid:
MRECISIHVGQ
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
60.5
44.3
Major BPS
62.5
0.31
1.2
69
38.9
Major PPT
76.4
0.59
0.7
69.6
31.2
Minor 5ss
28.8
-2.4
3.5
34.5
43.8
Minor BPS
64.4
0.43
1.8
76.35
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007864
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008178
64531339 - 64538072
6734