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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_64534949_64535654_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
64534949 - 64535654
Intron Length:
706

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTCAGTATA
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTTGGTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTTTTACAATT
Flanking Amino Acid:
VMVDLEPSVVDEVRAGTFRQ
Intron Amino Acid Position:
76

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
1.2
87.1
30
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
71
0.47
1
72.1
37.9
Minor 5ss
34.7
-1.7
2.7
42.8
44
Minor BPS
56.7
0.29
1.8
80.49
35.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007864
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008178
64531339 - 64538072
6734