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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_64535804_64536337_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
64535804 - 64536337
Intron Length:
534

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTCCC
5'SS Class:
strong_major
3'SS Sequence:
TTTTGGTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAC
U12 Branch Point Sequence:
CTATTCTTAGTC
Flanking Amino Acid:
DVVLDRVRKLTDACSGLQGF
Intron Amino Acid Position:
126

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
71.5
38.5
Major BPS
77.8
0.69
0.9
69.4
37.3
Major PPT
81.3
0.7
0.9
73.5
41.9
Minor 5ss
35.6
-1.6
2.9
43.1
37.8
Minor BPS
60.3
0.3
1.6
66.44
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007864
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008178
64531339 - 64538072
6734