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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_64543197_64546058_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
64543197 - 64546058
Intron Length:
2862

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGAGCT
5'SS Class:
strong_major
3'SS Sequence:
TGTCCTTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCCCAT
U12 Branch Point Sequence:
TGATCCCCATTT
Flanking Amino Acid:
EGLPRLRLREFFCRRAVLFM
Intron Amino Acid Position:
30

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
72.5
37.3
Major BPS
59.7
0.24
1.3
68.6
38.9
Major PPT
82.7
0.73
0.8
77.1
31.6
Minor 5ss
31.7
-2.1
3.6
47.8
47.9
Minor BPS
46.2
-0.2
2.1
67.08
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007508
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007808
64543110 - 64556726
13617